diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 08bb4e94949ae720316076298aea5fae4cf72370..11033ac6fba785c04969dda8306c75aabd69b380 100755
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -1,12 +1,12 @@
 before_script:
   - module load python/3.6.1-2-anaconda
-  - module load nextflow/0.27.6
-  - ln -s /project/shared/bicf_workflow_ref/workflow_testdata/cellranger_count/*fastq.gz test_data/
+  - module load nextflow/0.31.1_Ignite
 
 stages:
-  - integration
+  - astrocyte
 
-simple_test:
-  stage: integration
+astrocyte_check:
+  stage: astrocyte
   script:
-  - nextflow run workflow/main.nf
+  - astrocyte_cli check ../tcga_shiny
+