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Commit 21d8e052 authored by Brandi Cantarel's avatar Brandi Cantarel
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adding submodules

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.gitlab-ci.yml
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...@@ -4,12 +4,14 @@ ...@@ -4,12 +4,14 @@
variables: variables:
RUNDIR: "/project/BICF/BICF_Core/shared/astrocyte_test_ci/rnaseq_test" RUNDIR: "/project/BICF/BICF_Core/shared/astrocyte_test_ci/rnaseq_test"
TEST_BRANCH: "master" TEST_BRANCH: "master"
GIT_SUBMODULE_STATEGY: recursive
before_script: before_script:
- module load nextflow/0.27.6 - module load nextflow/0.27.6
- mkdir -p "${RUNDIR}" - mkdir -p "${RUNDIR}"
- ln -s /project/shared/bicf_workflow_ref/workflow_testdata/rnaseq/* ${RUNDIR}/test_data/
- echo $RUNDIR - echo $RUNDIR
- ln -s /project/shared/bicf_workflow_ref/workflow_testdata/rnaseq ${RUNDIR}/test_data - ls -l ${RUNDIR}/test_data/
stages: stages:
- integration - integration
......
process_scripts @ b6d2f689
Subproject commit b6d2f6898ecc1890b4df305e9505bdaa5eace4a6
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