From 21d8e052e5211096d7ac30743ecced568b1a76aa Mon Sep 17 00:00:00 2001
From: Brandi Cantarel <brandi.cantarel@utsouthwestern.edu>
Date: Thu, 15 Mar 2018 16:45:17 -0500
Subject: [PATCH] adding submodules
---
.gitlab-ci.yml | 4 +++-
workflow/process_scripts | 1 +
2 files changed, 4 insertions(+), 1 deletion(-)
create mode 160000 workflow/process_scripts
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index ebba4fb..bfc71b3 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -4,12 +4,14 @@
variables:
RUNDIR: "/project/BICF/BICF_Core/shared/astrocyte_test_ci/rnaseq_test"
TEST_BRANCH: "master"
+ GIT_SUBMODULE_STATEGY: recursive
before_script:
- module load nextflow/0.27.6
- mkdir -p "${RUNDIR}"
+ - ln -s /project/shared/bicf_workflow_ref/workflow_testdata/rnaseq/* ${RUNDIR}/test_data/
- echo $RUNDIR
- - ln -s /project/shared/bicf_workflow_ref/workflow_testdata/rnaseq ${RUNDIR}/test_data
+ - ls -l ${RUNDIR}/test_data/
stages:
- integration
diff --git a/workflow/process_scripts b/workflow/process_scripts
new file mode 160000
index 0000000..b6d2f68
--- /dev/null
+++ b/workflow/process_scripts
@@ -0,0 +1 @@
+Subproject commit b6d2f6898ecc1890b4df305e9505bdaa5eace4a6
--
GitLab