Commits · master · BICF / Astrocyte / methylation_analysis

Dec 28, 2020
- Merge branch '6-license_doi' into 'master' · 5f5a95f9
  Venkat Malladi authored Dec 28, 2020
  
  Resolve "Add license." Closes #4 and #6 See merge request !2
  5f5a95f9
Aug 15, 2020
- Add in badges and license. Closes #4 · b5a3923a
  Venkat Malladi authored Aug 15, 2020
  
  b5a3923a
- Add License. Closes #6 · 3e2ddef3
  Venkat Malladi authored Aug 15, 2020
  
  3e2ddef3
Jul 13, 2020
- fix astrocyte yml formatting again · a2070ee1
  Spencer Barnes authored Jul 13, 2020
  
  publish_0.0.1rc2
  
  a2070ee1
- fix astrocyte yml formatting · 563ab75a
  Spencer Barnes authored Jul 13, 2020
  
  563ab75a
- add parameters to astrocyte yml · 5b66d32d
  Spencer Barnes authored Jul 13, 2020
  
  5b66d32d
Jul 03, 2020
- modify main.nf to include multiqc conf path · 999e057d
  Spencer Barnes authored Jul 03, 2020
  
  publish_0.0.1rc1
  
  999e057d
Jul 02, 2020
- remove superfluous comment lines and fix biohpc config · 38a79de4
  Spencer Barnes authored Jul 02, 2020
  
  38a79de4
- fix python version and add singularity for multiqc · ef80fc4e
  Spencer Barnes authored Jul 02, 2020
  
  ef80fc4e
Jul 01, 2020
- modify diffmeth script · beb2a623
  Spencer Barnes authored Jul 01, 2020
  
  beb2a623
Jun 24, 2020
- modify strings in mouse align pytest · ff6be21a
  Spencer Barnes authored Jun 24, 2020
  
  ff6be21a
- fix output path in trim pytest · e3e30bf3
  Spencer Barnes authored Jun 24, 2020
  
  e3e30bf3
Jun 23, 2020
- fix output path in methyl extract pytest · f94cd594
  Spencer Barnes authored Jun 23, 2020
  
  f94cd594
- modify path in align reads pytest · 2e987ca1
  Spencer Barnes authored Jun 23, 2020
  
  2e987ca1
- modify strings in align pytest · f98fd03f
  Spencer Barnes authored Jun 23, 2020
  
  f98fd03f
- fix array index in align reads test · 8f5a7119
  Spencer Barnes authored Jun 23, 2020
  
  8f5a7119
- correct ci yml · 874203a1
  Spencer Barnes authored Jun 23, 2020
  
  874203a1
- fix pytest files · 1383503a
  Spencer Barnes authored Jun 23, 2020
  
  1383503a
Jun 22, 2020
- modify pytests for full scale data · 32217667
  Spencer Barnes authored Jun 22, 2020
  
  32217667
- fix pipeline trace variable · 2001be2d
  Spencer Barnes authored Jun 22, 2020
  
  2001be2d
- add pipeline version to pipeline tracking · 2bfa5f65
  Spencer Barnes authored Jun 22, 2020
  
  2bfa5f65
Jun 17, 2020
- modify mouse pytests · 36c229a7
  Spencer Barnes authored Jun 17, 2020
  
  36c229a7
- fix genome on human test · b1e2390d
  Spencer Barnes authored Jun 17, 2020
  
  b1e2390d
- remove -q option and add NXF_OPTS to nextflow invocations · e425a3d6
  Spencer Barnes authored Jun 17, 2020
  
  e425a3d6
Jun 16, 2020
- correct -q option · 50a35e49
  Spencer Barnes authored Jun 16, 2020
  
  50a35e49
- add -q option to nextflow run · dce1dcdd
  Spencer Barnes authored Jun 16, 2020
  
  dce1dcdd
- fix genome size file location in R script · e9db5cf3
  Spencer Barnes authored Jun 16, 2020
  
  e9db5cf3
- modify cluster method in diff_meth.R · bb7421d4
  Spencer Barnes authored Jun 16, 2020
  
  bb7421d4
- modify design pe file · 4eba852f
  Spencer Barnes authored Jun 16, 2020
  
  4eba852f
- modify design pe file · 24b95219
  Spencer Barnes authored Jun 16, 2020
  
  24b95219
Jun 15, 2020
- fix pe/se test designations · dd55eb05
  Spencer Barnes authored Jun 15, 2020
  
  dd55eb05
- update ci yml · bf3b3d37
  Spencer Barnes authored Jun 15, 2020
  
  bf3b3d37
- fix design files and data locations · a2e8f96a
  Spencer Barnes authored Jun 15, 2020
  
  a2e8f96a
- switch to full size fastq · 38c64ddc
  Spencer Barnes authored Jun 15, 2020
  
  38c64ddc
- add mouse test back in · 436e0836
  Spencer Barnes authored Jun 15, 2020
  
  436e0836
- Merge branch '1-install-methylation' into 'master' · 4ebabd72
  Spencer Barnes authored Jun 15, 2020
  
  Resolve "Install methylation" Closes #1 See merge request !1
  4ebabd72
- Fix paths. · f669ef78
  Venkat Malladi authored Jun 15, 2020
  
  f669ef78
- Update install. · 72e5228e
  Venkat Malladi authored Jun 15, 2020
  
  72e5228e
- Resolve memrge. · f08f5cfa
  Venkat Malladi authored Jun 15, 2020
  
  f08f5cfa
- Run on master · a1b06250
  Venkat Malladi authored Jun 15, 2020
  
  a1b06250