Commit bb7421d4 authored by Spencer Barnes's avatar Spencer Barnes
Browse files

modify cluster method in diff_meth.R

parent 4eba852f
Pipeline #7226 failed with stages
in 106 minutes and 30 seconds
......@@ -88,7 +88,7 @@ meth <- unite(filtered.x, destrand = FALSE)
#correlation and pca
pdf("methyl_corr.pdf")
getCorrelation(meth, plot = TRUE)
clusterSamples(meth, dist = "correlation", method = "ward.D", plot=TRUE)
clusterSamples(meth, dist = "correlation", method = "ward", plot=TRUE)
PCASamples(meth, screeplot = TRUE)
PCASamples(meth)
dev.off()
......
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