Commit bf3b3d37 authored by Spencer Barnes's avatar Spencer Barnes
Browse files

update ci yml

parent a2e8f96a
Pipeline #7216 failed with stages
in 15 minutes and 27 seconds
......@@ -27,7 +27,7 @@ GRCh38-0.0.1:
except:
- tags
script:
- nextflow run ./workflow/main.nf --pairedEnd --designFile "./test_data/test_design_pe.csv" --reads "./test_data/*fastq.gz"
- nextflow run ./workflow/main.nf --pairedEnd --designFile "./test_data/test_design_pe.txt" --reads "./test_data/*fastq.gz"
- pytest -m pairedend
- pytest -m methData_pe
- pytest -m trimData_pe
......@@ -48,7 +48,7 @@ mm10-0.0.1:
except:
- tags
script:
- nextflow run ./workflow/main.nf --designFile "./test_data/test_design_se.csv" --reads "./test_data/*fastq.gz"
- nextflow run ./workflow/main.nf --designFile "./test_data/test_design_se.txt" --reads "./test_data/*fastq.gz"
- pytest -m methData_se
- pytest -m singleend
- pytest -m trimData_se
......
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