Commit e9db5cf3 authored by Spencer Barnes's avatar Spencer Barnes
Browse files

fix genome size file location in R script

parent bb7421d4
Pipeline #7232 failed with stages
in 125 minutes and 2 seconds
......@@ -121,9 +121,9 @@ dev.off()
##chromomap creation
if(args$assembly == "mm10" | args$assembly == "GRCm38"){
genome.sizes <- "/work/BICF/s181385/methylation_test_data/sizes.genome.mm10"
genome.sizes <- "/project/shared/bicf_workflow_ref/workflow_testdata/methylation_analysis/sizes.genome.mm10"
}else if(args$assembly == "GRCh38"){
genome.sizes <- "/work/BICF/s181385/methylation_test_data/sizes.genome.GRCh38"
genome.sizes <- "/project/shared/bicf_workflow_ref/workflow_testdata/methylation_analysis/sizes.genome.GRCh38"
}
chrom.data <- all
......
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