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Resolve "Include Phantompeakqualtools step"

Merged Resolve "Include Phantompeakqualtools step"
5-phantompeakcalls into master
Merged Venkat Malladi requested to merge 5-phantompeakcalls into master
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workflow/main.nf
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@@ -239,12 +239,12 @@ process crossReads {
if (pairedEnd) {
"""
python3 $baseDir/scripts/xcor.py -b $seTagAlign -p
python3 $baseDir/scripts/xcor.py -t $seTagAlign -p
"""
}
else {
"""
python3 $baseDir/scripts/xcor.py -b $seTagAlign
python3 $baseDir/scripts/xcor.py -t $seTagAlign
"""
}