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Resolve "Include Phantompeakqualtools step"

Merged Venkat Malladi requested to merge 5-phantompeakcalls into master
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@@ -244,7 +244,7 @@ process crossReads {
}
else {
"""
python3 $baseDir/scripts/xcor.py.py -b $seTagAlign
python3 $baseDir/scripts/xcor.py -b $seTagAlign
"""
}