Commits · 0307bd09e2730bd424a5c03912e1b565268a3cfa · BICF / Astrocyte / chipseq_analysis

Mar 23, 2020
- Update file paths. · f76f9efd
  Venkat Malladi authored 5 years ago
  
  f76f9efd
Mar 21, 2020
- Add usage statement. · 8fba6bd9
  Venkat Malladi authored 5 years ago
  
  8fba6bd9
- Update documentation and use GTF file. · d9e3b2b4
  Venkat Malladi authored 5 years ago
  
  d9e3b2b4
Feb 29, 2020
- Update for bats testing. · 5ca30c98
  Venkat Malladi authored 5 years ago
  
  5ca30c98
Feb 16, 2020
- Update path · b2a2fa7a
  Venkat Malladi authored 5 years ago
  
  b2a2fa7a
Feb 15, 2020
- Fix path for multiqc. · 05ae565f
  Venkat Malladi authored 5 years ago
  
  05ae565f
- update reference. · 51142e4a
  Venkat Malladi authored 5 years ago
  
  51142e4a
Feb 12, 2020
- Update plot profile name. · 08867511
  Venkat Malladi authored 5 years ago
  
  08867511
- Changed singularity container to allow for rendering of references. · 7a76914b
  Venkat Malladi authored 5 years ago
  
  7a76914b
Aug 14, 2019
- Make Multiqc using singularity · 92ed4283
  Jeremy Mathews authored 5 years ago
  
  92ed4283
Aug 08, 2019
- Fix biohpc.config · ebaa8534
  Jeremy Mathews authored 5 years ago
  
  ebaa8534
Aug 06, 2019
- Fix and test use of GTF and Genename params · 5e5202b0
  Jeremy Mathews authored 5 years ago
  
  5e5202b0
Jul 24, 2019
- update reference genome to gtf · 1dd9f5e4
  Jeremy Mathews authored 5 years ago
  
  1dd9f5e4
Jul 19, 2019
- Remove redundant GTF file · 0466aa32
  Venkat Malladi authored 5 years ago
  
  0466aa32
- fix biohpc.config typos and add gtf location to astrocyte params · c1c8d3a0
  Jeremy Mathews authored 5 years ago
  
  c1c8d3a0
Jul 16, 2019
- Fix output from plot profile. · c9b7cbad
  Jeremy Mathews authored 5 years ago
  
  c9b7cbad
Jul 15, 2019
- add plot profile test. output to experiment QC folder · a5928f13
  Jeremy Mathews authored 5 years ago
  
  a5928f13
- Add outputs to plot profile · 69aa7720
  Jeremy Mathews authored 5 years ago
  
  69aa7720
Jul 12, 2019
- Add Plot Profile. Add python version to multiqc. · d41309dc
  Jeremy Mathews authored 5 years ago
  
  d41309dc
May 24, 2019
- 56-part a-Remove .txt from reference fasta file · 965d0dd5
  Jeremy Mathews authored 5 years ago
  
  965d0dd5
May 17, 2019
- Add license to main.nf. · 8037f1ec
  Venkat Malladi authored 5 years ago
  
  8037f1ec
May 14, 2019
- Add in python3 for motif serach. · 2c56b9c7
  Venkat Malladi authored 5 years ago
  
  2c56b9c7
May 06, 2019
- Covert back to files. · b18ced81
  Venkat Malladi authored 5 years ago
  
  b18ced81
- Fix association of file path. · cd167def
  Venkat Malladi authored 5 years ago
  
  cd167def
- Update main.nf to have file path for main.nf. · 9c53690d
  Venkat Malladi authored 5 years ago
  
  9c53690d
May 02, 2019
- Updated changes suggested by Spencer and fix pipeline error. · 41fcff0b
  Venkat Malladi authored 5 years ago
  
  41fcff0b
Apr 23, 2019
- Fix test file error and missing modules. · 3065da66
  Venkat Malladi authored 5 years ago
  
  3065da66
Apr 22, 2019
- Update regular variables. · 38d03ac0
  Venkat Malladi authored 5 years ago
  
  38d03ac0
- update astrocyte to use true false. · 61a87202
  Venkat Malladi authored 5 years ago
  
  61a87202
- Fix variable assignment. · b4a86fab
  Venkat Malladi authored 5 years ago
  
  b4a86fab
- Move single-end to run on astrocyte. · 3cf06f92
  Venkat Malladi authored 5 years ago
  
  3cf06f92
Apr 21, 2019
- Direct ouput correctly. · dafd3bc8
  Venkat Malladi authored 5 years ago
  
  dafd3bc8
- Revert changes. · d13047f0
  Venkat Malladi authored 5 years ago
  
  d13047f0
- Consistent with output syntax. · 6b279430
  Venkat Malladi authored 5 years ago
  
  6b279430
- Add in multiqc reports. · a7cb17d8
  Venkat Malladi authored 5 years ago
  
  a7cb17d8
Apr 20, 2019
- Move modules to main for astrocyte. · 34b002a0
  Venkat Malladi authored 5 years ago
  
  34b002a0
Apr 18, 2019
- Update to be astrocyte compatible. · eb8e3e73
  Venkat Malladi authored 5 years ago
  
  eb8e3e73
- Add in software version generation. · 7a2acee9
  Venkat Malladi authored 5 years ago
  
  7a2acee9
Apr 17, 2019
- Fix software outout. · f3de8565
  Venkat Malladi authored 5 years ago
  
  f3de8565
- Revert distinct to first. · 1f9b2c71
  Venkat Malladi authored 5 years ago
  
  1f9b2c71