Commits · 01c21d3c07c1ec7c86d50d016f3e9163da7348ee · BICF / Astrocyte / chipseq_analysis

Nov 16, 2017
- Fix mapping of values. · 01c21d3c
  Venkat Malladi authored 7 years ago
  
  01c21d3c
- Fix config file. · 088309a4
  Venkat Malladi authored 7 years ago
  
  088309a4
- Fix channels. · 8ebef170
  Venkat Malladi authored 7 years ago
  
  8ebef170
- Fix channels. · dcb430e3
  Venkat Malladi authored 7 years ago
  
  dcb430e3
- Fix name. · c080299f
  Venkat Malladi authored 7 years ago
  
  c080299f
- Fix peak outputs. · 226a5924
  Venkat Malladi authored 7 years ago
  
  226a5924
- Add in naive overlap peaks. · a2609dc8
  Venkat Malladi authored 7 years ago
  
  a2609dc8
Nov 15, 2017
- Fix naming schema of xcor. · 0ee7bca0
  Venkat Malladi authored 7 years ago
  
  0ee7bca0
- Changed to bedSort. · bbeb4524
  Venkat Malladi authored 7 years ago
  
  bbeb4524
- Fix syntax. · 45277ef8
  Venkat Malladi authored 7 years ago
  
  45277ef8
- Change to local executor. · 0d5907c2
  Venkat Malladi authored 7 years ago
  
  0d5907c2
- Add in basename to name the process. · 9864c55e
  Venkat Malladi authored 7 years ago
  
  9864c55e
Nov 14, 2017
- Fix name of process. · 822181c3
  Venkat Malladi authored 7 years ago
  
  822181c3
- Add in call peaks step and configurations. · 96e6d832
  Venkat Malladi authored 7 years ago
  
  96e6d832
- Fix parsing of fraglength. · bb44fc95
  Venkat Malladi authored 7 years ago
  
  bb44fc95
- Fixed missing libraries and update syntax for python3. · 8c7736d9
  Venkat Malladi authored 7 years ago
  
  8c7736d9
- Fix xcor to be calucated and updated the pseudoreplicate names. · 38d866fe
  Venkat Malladi authored 7 years ago
  
  38d866fe
- Adding in basics for calling peaks with macs2. · 892d2c1b
  Venkat Malladi authored 7 years ago
  
  892d2c1b
- Fix psuedo replicate calling. · 52095af0
  Venkat Malladi authored 7 years ago
  
  52095af0
Nov 10, 2017
- Fix single replicate assiging. · d5243c8b
  Venkat Malladi authored 7 years ago
  
  d5243c8b
Oct 31, 2017
- Update where flatten takes place. · f76eea70
  Venkat Malladi authored 7 years ago
  
  f76eea70
- Fix list of files. · f4acf072
  Venkat Malladi authored 7 years ago
  
  f4acf072
Oct 30, 2017
- Merge branch '13-poolandpseudo' into 'master' · 55474b3b
  Venkat Malladi authored 7 years ago
```
Resolve "Pool and Pseudoreplication"

Closes #13

See merge request !12
```
  55474b3b
- Add missing library os. · 0b1e6326
  Venkat Malladi authored 7 years ago
  
  0b1e6326
- Fix double if statement. · f78b3a80
  Venkat Malladi authored 7 years ago
  
  f78b3a80
- Fix string and comparing of values. · c0e0b003
  Venkat Malladi authored 7 years ago
  
  c0e0b003
- Fix refernece to cutoff value in nextflow process. · 6839e190
  Venkat Malladi authored 7 years ago
  
  6839e190
- Fix file reference. · 96c119ec
  Venkat Malladi authored 7 years ago
  
  96c119ec
Oct 29, 2017
- Fix string of index. · 0a9794c2
  Venkat Malladi authored 7 years ago
  
  0a9794c2
- Fix index as string references. · bf27b99b
  Venkat Malladi authored 7 years ago
  
  bf27b99b
Oct 28, 2017
- Fix typo in addig in experimentId. · a3c35282
  Venkat Malladi authored 7 years ago
  
  a3c35282
Oct 27, 2017
- Remove last reps mention. · 544bce42
  Venkat Malladi authored 7 years ago
  
  544bce42
- Fix syntax issues and libaries. · 477530aa
  Venkat Malladi authored 7 years ago
  
  477530aa
- Fix pseudoreplication to be only 2 replicates. · ae9e6c75
  Venkat Malladi authored 7 years ago
  
  ae9e6c75
- Fix passing of experiment id. · 3ba985c6
  Venkat Malladi authored 7 years ago
  
  3ba985c6
- Make process not local. · 3b05c7c2
  Venkat Malladi authored 7 years ago
  
  3b05c7c2
- Fix syntax. · 6f938782
  Venkat Malladi authored 7 years ago
  
  6f938782
- Add in pooling and psuedoreplicate scripts and tests. · 32e90024
  Venkat Malladi authored 7 years ago
  
  32e90024
Oct 26, 2017
- Refactor code to have consistent use of arguments and referenceing pandas. · 249284b7
  Venkat Malladi authored 7 years ago
  
  249284b7
Oct 25, 2017
- Fix syntax of get_args across all scripts. · 648dc44d
  Venkat Malladi authored 7 years ago
  
  648dc44d