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Merge branch '13-poolandpseudo' into 'master'
Resolve "Pool and Pseudoreplication" Closes #13 See merge request !12
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- workflow/conf/biohpc.config 8 additions, 0 deletionsworkflow/conf/biohpc.config
- workflow/main.nf 75 additions, 17 deletionsworkflow/main.nf
- workflow/scripts/check_design.py 13 additions, 9 deletionsworkflow/scripts/check_design.py
- workflow/scripts/convert_reads.py 1 addition, 0 deletionsworkflow/scripts/convert_reads.py
- workflow/scripts/experiment_design.py 84 additions, 0 deletionsworkflow/scripts/experiment_design.py
- workflow/scripts/experiment_qc.py 7 additions, 5 deletionsworkflow/scripts/experiment_qc.py
- workflow/scripts/map_qc.py 1 addition, 0 deletionsworkflow/scripts/map_qc.py
- workflow/scripts/map_reads.py 1 addition, 0 deletionsworkflow/scripts/map_reads.py
- workflow/scripts/pool_and_psuedoreplicate.py 278 additions, 0 deletionsworkflow/scripts/pool_and_psuedoreplicate.py
- workflow/scripts/trim_reads.py 4 additions, 1 deletionworkflow/scripts/trim_reads.py
- workflow/scripts/utils.py 19 additions, 0 deletionsworkflow/scripts/utils.py
- workflow/scripts/xcor.py 1 addition, 0 deletionsworkflow/scripts/xcor.py
- workflow/tests/test_experiment_design.py 41 additions, 0 deletionsworkflow/tests/test_experiment_design.py
- workflow/tests/test_pool_and_psuedoreplicate.py 68 additions, 0 deletionsworkflow/tests/test_pool_and_psuedoreplicate.py
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