Skip to content
Snippets Groups Projects
Commit d9919554 authored by Venkat Malladi's avatar Venkat Malladi
Browse files

Only run certain tests on branches vs master.

parent 5f6dd111
Branches
Tags
1 merge request!20Resolve "Use SampleIds/ Experiment Id as file names throughtout pipeline"
Pipeline #3177 failed with stages
in 18 hours, 55 minutes, and 30 seconds
...@@ -17,6 +17,10 @@ user_configuration: ...@@ -17,6 +17,10 @@ user_configuration:
single_end_mouse: single_end_mouse:
stage: single stage: single
only:
- master
except:
- branches
script: script:
- nextflow run workflow/main.nf -resume - nextflow run workflow/main.nf -resume
- pytest -m singleend - pytest -m singleend
...@@ -25,6 +29,10 @@ single_end_mouse: ...@@ -25,6 +29,10 @@ single_end_mouse:
paired_end_human: paired_end_human:
stage: single stage: single
only:
- branches
except:
- master
script: script:
- nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_ENCSR729LGA_PE.txt" --genome 'GRCh38' --pairedEnd true -resume - nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_ENCSR729LGA_PE.txt" --genome 'GRCh38' --pairedEnd true -resume
- pytest -m pairedend - pytest -m pairedend
...@@ -33,6 +41,10 @@ paired_end_human: ...@@ -33,6 +41,10 @@ paired_end_human:
single_end_diff: single_end_diff:
stage: multiple stage: multiple
only:
- branches
except:
- master
script: script:
- nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_diff_SE.txt" --genome 'GRCm38' -resume - nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_diff_SE.txt" --genome 'GRCm38' -resume
- pytest -m singlediff - pytest -m singlediff
...@@ -40,6 +52,10 @@ single_end_diff: ...@@ -40,6 +52,10 @@ single_end_diff:
expire_in: 2 days expire_in: 2 days
paired_end_diff: paired_end_diff:
only:
- master
except:
- branches
stage: multiple stage: multiple
script: script:
- nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_diff_PE.txt" --genome 'GRCh38' --pairedEnd true -resume - nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_diff_PE.txt" --genome 'GRCh38' --pairedEnd true -resume
......
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment