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Commit a33eb4d4 authored by Venkat Malladi's avatar Venkat Malladi
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collect the qc metrics.

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1 merge request!5Resolve "Add mapping and trimming"
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...@@ -114,6 +114,7 @@ process alignReads { ...@@ -114,6 +114,7 @@ process alignReads {
output: output:
set sampleId, file('*.bam'), biosample, factor, treatment, replicate, controlId into mappedReads set sampleId, file('*.bam'), biosample, factor, treatment, replicate, controlId into mappedReads
set file('*.srt.bam.flagstat.qc')
script: script:
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