diff --git a/workflow/main.nf b/workflow/main.nf
index fedefa76c6ae65cf356e8662d552612b9e896f61..721e61af3b2976e5acbcbbbda8df09b5e1e44a1b 100644
--- a/workflow/main.nf
+++ b/workflow/main.nf
@@ -114,6 +114,7 @@ process alignReads {
   output:
 
   set sampleId, file('*.bam'), biosample, factor, treatment, replicate, controlId into mappedReads
+  set file('*.srt.bam.flagstat.qc')
 
   script: