From a33eb4d49e78aed76e5b986017a0394e82b1401c Mon Sep 17 00:00:00 2001
From: Venkat Malladi <venkat.malladi@utsouthwestern.edu>
Date: Sun, 8 Oct 2017 18:41:06 -0500
Subject: [PATCH] collect the qc metrics.
---
workflow/main.nf | 1 +
1 file changed, 1 insertion(+)
diff --git a/workflow/main.nf b/workflow/main.nf
index fedefa7..721e61a 100644
--- a/workflow/main.nf
+++ b/workflow/main.nf
@@ -114,6 +114,7 @@ process alignReads {
output:
set sampleId, file('*.bam'), biosample, factor, treatment, replicate, controlId into mappedReads
+ set file('*.srt.bam.flagstat.qc')
script:
--
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