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Commit 965d0dd5 authored by Jeremy Mathews's avatar Jeremy Mathews
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56-part a-Remove .txt from reference fasta file

parent 730a2da3
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workflow/main.nf
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...@@ -34,7 +34,7 @@ if (params.astrocyte) { ...@@ -34,7 +34,7 @@ if (params.astrocyte) {
referenceLocation = "/project/shared/bicf_workflow_ref" referenceLocation = "/project/shared/bicf_workflow_ref"
params.bwaIndex = "$referenceLocation/$params.genome" params.bwaIndex = "$referenceLocation/$params.genome"
params.chromSizes = "$referenceLocation/$params.genome/genomefile.txt" params.chromSizes = "$referenceLocation/$params.genome/genomefile.txt"
params.fasta = "$referenceLocation/$params.genome/genome.fa.txt" params.fasta = "$referenceLocation/$params.genome/genome.fa"
if (params.genome == 'GRCh37' || params.genome == 'GRCh38') { if (params.genome == 'GRCh37' || params.genome == 'GRCh38') {
params.genomeSize = 'hs' params.genomeSize = 'hs'
} else if (params.genome == 'GRCm38') { } else if (params.genome == 'GRCm38') {
......
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