From 965d0dd5ae93728d8f9d1fa53da76e8249918b98 Mon Sep 17 00:00:00 2001
From: Jeremy Mathews <Jeremy.Mathews@utsouthwestern.edu>
Date: Fri, 24 May 2019 16:29:37 -0500
Subject: [PATCH] 56-part a-Remove .txt from reference fasta file
---
workflow/main.nf | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/workflow/main.nf b/workflow/main.nf
index 2496d93..9b45adb 100644
--- a/workflow/main.nf
+++ b/workflow/main.nf
@@ -34,7 +34,7 @@ if (params.astrocyte) {
referenceLocation = "/project/shared/bicf_workflow_ref"
params.bwaIndex = "$referenceLocation/$params.genome"
params.chromSizes = "$referenceLocation/$params.genome/genomefile.txt"
- params.fasta = "$referenceLocation/$params.genome/genome.fa.txt"
+ params.fasta = "$referenceLocation/$params.genome/genome.fa"
if (params.genome == 'GRCh37' || params.genome == 'GRCh38') {
params.genomeSize = 'hs'
} else if (params.genome == 'GRCm38') {
--
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