diff --git a/workflow/main.nf b/workflow/main.nf index 2496d93ca2c9c82bcf996d0c854ac859c786ce18..9b45adb8235ef8964ac0d00fc86fd47b12d5cf0a 100644 --- a/workflow/main.nf +++ b/workflow/main.nf @@ -34,7 +34,7 @@ if (params.astrocyte) { referenceLocation = "/project/shared/bicf_workflow_ref" params.bwaIndex = "$referenceLocation/$params.genome" params.chromSizes = "$referenceLocation/$params.genome/genomefile.txt" - params.fasta = "$referenceLocation/$params.genome/genome.fa.txt" + params.fasta = "$referenceLocation/$params.genome/genome.fa" if (params.genome == 'GRCh37' || params.genome == 'GRCh38') { params.genomeSize = 'hs' } else if (params.genome == 'GRCm38') {