Commits · 62642c4d9dfc6cc748cbc4f7fef7d0d4ef074c99 · BICF / Astrocyte / cellranger_count

Apr 13, 2020
- Add nexflow.config to ci run · 62642c4d
  Gervaise Henry authored 5 years ago
  
  62642c4d
- Remove pytests from CI · 2ebf343e
  Gervaise Henry authored 5 years ago
  
  2ebf343e
- Move pytest for simple ci test also · 13d1f485
  Gervaise Henry authored 5 years ago
  
  13d1f485
- Try put ci pytest inline with inegrations · 948cb171
  Gervaise Henry authored 5 years ago
  
  948cb171
- Change CI test to use new kitVersion · 5a377165
  Gervaise Henry authored 5 years ago
  
  5a377165
- Set default queue to 32GB and fix CI for new runner settings · 4e8b9e89
  Gervaise Henry authored 5 years ago
  
  4e8b9e89
- Update README.md badges · ff4b8f53
  Gervaise Henry authored 5 years ago
  
  ff4b8f53
- Update indev version to 2.0.0 · 12b3cb9f
  Gervaise Henry authored 5 years ago
  
  12b3cb9f
- Update CHANGELOG · 1e279397
  Gervaise Henry authored 5 years ago
  
  1e279397
- Set options reguardless of astrocyte · a1edc582
  Gervaise Henry authored 5 years ago
  
  a1edc582
- Fix astrocyte.yml lists · 99218b98
  Gervaise Henry authored 5 years ago
  
  99218b98
- Update default params · 64600944
  Gervaise Henry authored 5 years ago
  
  64600944
- Update docs · da45ad47
  Gervaise Henry authored 5 years ago
  
  da45ad47
- Update biohpc.config with new chemistry options · 8d6237cb
  Gervaise Henry authored 5 years ago
  
  8d6237cb
- Add 5prime chemistry option · 3240eff6
  Gervaise Henry authored 5 years ago
  
  3240eff6
Feb 21, 2020
- Merge branch '40-BUG.thread.error' into 'develop' · f80afb28
  Gervaise Henry authored 5 years ago
```
Resolve "BUG: thread error on Astrocyte"

Closes #39 and #40

See merge request !59
```
  f80afb28
- Fix nextflow config layering problem · 09cb56b3
  Gervaise Henry authored 5 years ago
  
  09cb56b3
- Update aws configs · 7c0192ff
  Gervaise Henry authored 5 years ago
  
  7c0192ff
- Edit changelog · 0acf7af9
  Gervaise Henry authored 5 years ago
  
  0acf7af9
- Remove redundant nextflow.config · e762ce19
  Gervaise Henry authored 5 years ago
  
  e762ce19
- Use profiles in ci · b45c214e
  Gervaise Henry authored 5 years ago
  
  b45c214e
- Add profiles to nextflow.config · 1baad703
  Gervaise Henry authored 5 years ago
  
  1baad703
- Add config update (layered) · 6669d2a9
  Gervaise Henry authored 5 years ago
  
  6669d2a9
- Add ulimit -u to prevent thread error · f57ad93b
  Gervaise Henry authored 5 years ago
  
  f57ad93b
Nov 08, 2019
- Add cluster hold option in biohpc config · 2eab2636
  Gervaise Henry authored 5 years ago
  
  2eab2636
- Remove unnecessary intermediate outputs from publish and remove unit tests for them · 0eacd554
  Gervaise Henry authored 5 years ago
  
  0eacd554
Nov 07, 2019
- Merge branch '37-CheckDesignFile' into 'develop' · 2c696901
  Gervaise Henry authored 5 years ago
```
Resolve 37-Design File Check

Closes #37

See merge request !58
```
  2c696901
- Resolve 37-Design File Check · 7972b21c
  Jeremy Mathews authored 5 years ago
  
  7972b21c
Oct 08, 2019
- Add GHH Nextflow Tower token to config · e552fe2e
  Gervaise Henry authored 5 years ago
  
  e552fe2e
- Add Nextflow Tower to CI · d4074018
  Gervaise Henry authored 5 years ago
  
  d4074018
Sep 16, 2019
- Update index.md · 15542ebf
  Gervaise Henry authored 5 years ago
  
  15542ebf
- Update index.md · ed0be031
  Gervaise Henry authored 5 years ago
  
  ed0be031
Aug 14, 2019

Update CHANGELOG.md · bedc0841
Gervaise Henry authored 5 years ago

bedc0841

Update workflow/main.nf, workflow/scripts/check_design.py,... · 7ec07b61

Gervaise Henry authored 5 years ago

Update workflow/main.nf, workflow/scripts/check_design.py, workflow/scripts/generate_references.py, workflow/scripts/generate_versions.py, workflow/scripts/filename_check.sh, workflow/tests/test_check_design.py, workflow/tests/test_count.py, workflow/tests/test_multiqc.py, workflow/tests/test_versions.py files

7ec07b61

Add LICENSE · 8acb2e82
Gervaise Henry authored 5 years ago

8acb2e82

Aug 13, 2019
- Merge branch '35-ShinyApp' into 'develop' · 49a71f1e
  Gervaise Henry authored 5 years ago
```
Resolve "MultiQC error"

Closes #36

See merge request !56
```
  49a71f1e
- 36-MultiQC Error · 6b8418d3
  Jeremy Mathews authored 5 years ago
  
  6b8418d3
Aug 08, 2019
- Initial Commit for working vizapp · e4f70e92
  Jeremy Mathews authored 5 years ago
  
  e4f70e92
Aug 05, 2019
- Merge branch 'RemoveExceptFromCI' into 'develop' · 7a8d4bc2
  Gervaise Henry authored 5 years ago
```
Remove md changes from CI

See merge request !55
```
  7a8d4bc2
- Remove md changes from CI · b762db38
  Jeremy Mathews authored 5 years ago
  
  b762db38