Commits · 36e60a3d5e61d73ec1831d0f78cae029fdc80f2d · BICF / Astrocyte / cellranger_count

Apr 16, 2020
- Merge branch 'master' into 'develop' · 36e60a3d
  Gervaise Henry authored 4 years ago
```
Master

See merge request !64
```
  36e60a3d
Apr 15, 2020
- Update index.md · c54dd859
  Gervaise Henry authored 4 years ago
  
  c54dd859
- Update astrocyte_pkg.yml with cellranger 2.2.0 · a46a35ea
  Gervaise Henry authored 4 years ago
  
  a46a35ea
- Merge branch 'develop' into 'master' · 0f50ff0a
  Gervaise Henry authored 4 years ago
```
Develop

See merge request !63
```
  0f50ff0a
- Merge branch '41-containerize' into 'develop' · e634ce8e
  Gervaise Henry authored 4 years ago
```
Resolve "Containerize"

Closes #41

See merge request !62
```
  e634ce8e
- Fix mm10 ci trigger criteria · d52e0fbb
  Gervaise Henry authored 4 years ago
  
  d52e0fbb
- Change ci job run criteria · ab560486
  Gervaise Henry authored 4 years ago
  
  ab560486
- Add GitLab templates · 208b8334
  Gervaise Henry authored 4 years ago
  
  208b8334
- Update changelog · aab7475e
  Gervaise Henry authored 4 years ago
  
  aab7475e
- Update CI · 28602579
  Gervaise Henry authored 4 years ago
  
  28602579
- Add chemistry flag to all cellranger processes · db82d75f
  Gervaise Henry authored 4 years ago
  
  db82d75f
- Remove extension from ci cellranger commands · d2890509
  Gervaise Henry authored 4 years ago
  
  d2890509
- Change container test data to have fastq_path folder · c671c69e
  Gervaise Henry authored 4 years ago
  
  c671c69e
- Change singularity run to exec · 82d4928e
  Gervaise Henry authored 4 years ago
  
  82d4928e
- Fix stage name · e78016d5
  Gervaise Henry authored 4 years ago
  
  e78016d5
- Add container test as stage for CI · a9b05dbd
  Gervaise Henry authored 4 years ago
  
  a9b05dbd
- Fixcellranger 3.0.1 to 2.2.0 change · 5d4b2a05
  Gervaise Henry authored 4 years ago
  
  5d4b2a05
- Containerize · 43c8b517
  Gervaise Henry authored 4 years ago
  
  43c8b517
- Merge branch '42-update.params' into 'develop' · dbb856c4
  Gervaise Henry authored 4 years ago
```
Resolve "Update params to current standards"

Closes #42

See merge request !61
```
  dbb856c4
Apr 14, 2020
- Update changelog · c311c78c
  Gervaise Henry authored 4 years ago
  
  c311c78c
- Update pipeline status badges · 6b88586a
  Gervaise Henry authored 4 years ago
  
  6b88586a
- Update pipeline status badges · df29d851
  Gervaise Henry authored 4 years ago
  
  df29d851
- Fix detailed 3&4 kitVersion · 747e74bd
  Gervaise Henry authored 4 years ago
  
  747e74bd
- Fix variable definiton order · 18d6b504
  Gervaise Henry authored 4 years ago
  
  18d6b504
- Bring params up to standards · dfbcb8c5
  Gervaise Henry authored 4 years ago
  
  dfbcb8c5
- Merge branch '38-add.5prime' into 'develop' · aa1769fc
  Gervaise Henry authored 4 years ago
```
Resolve "Add 3':5' param"

Closes #38

See merge request !60
```
  aa1769fc
Apr 13, 2020
- Add back use params in config · c4717985
  Gervaise Henry authored 4 years ago
  
  c4717985
- Revert to layered configs · 17fe1fd5
  Gervaise Henry authored 4 years ago
  
  17fe1fd5
- Replace pytest · 40116fcc
  Gervaise Henry authored 4 years ago
  
  40116fcc
- Remove explicit config and try replacing -bg with -q · 801b68ab
  Gervaise Henry authored 4 years ago
  
  801b68ab
- Revert profile folder · c206f7bb
  Gervaise Henry authored 4 years ago
  
  c206f7bb
- Change profile config folder · e0bba7a7
  Gervaise Henry authored 4 years ago
  
  e0bba7a7
- Fix config filenames · 63b69db8
  Gervaise Henry authored 4 years ago
  
  63b69db8
- Compress profile configs · 85e6ed53
  Gervaise Henry authored 4 years ago
  
  85e6ed53
- Fix config call · 41071388
  Gervaise Henry authored 4 years ago
  
  41071388
- Add nexflow.config to ci run · 62642c4d
  Gervaise Henry authored 4 years ago
  
  62642c4d
- Remove pytests from CI · 2ebf343e
  Gervaise Henry authored 4 years ago
  
  2ebf343e
- Move pytest for simple ci test also · 13d1f485
  Gervaise Henry authored 4 years ago
  
  13d1f485
- Try put ci pytest inline with inegrations · 948cb171
  Gervaise Henry authored 4 years ago
  
  948cb171
- Change CI test to use new kitVersion · 5a377165
  Gervaise Henry authored 4 years ago
  
  5a377165