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Commit 747e74bd authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
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Fix detailed 3&4 kitVersion

parent 18d6b504
2 merge requests!63Develop,!61Resolve "Update params to current standards"
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.gitlab-ci.yml
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......@@ -138,7 +138,7 @@ detailed_3:
refs:
- tags
script:
- nextflow -q run workflow/main.nf -profile biohpc,cluster --fastq "test_data/mu.v3s2r10k/*.fastq.gz" --designFile "test_data/mu.v3s2r10k/design.csv" --genome 'mm10-3.0.0' --kitVersion 'three' --version '3.0.1'
- nextflow -q run workflow/main.nf -profile biohpc,cluster --fastq "test_data/mu.v3s2r10k/*.fastq.gz" --designFile "test_data/mu.v3s2r10k/design.csv" --genome 'mm10-3.0.0' --kitVersion '3GEXv3' --version '3.0.1'
- pytest -m count301
artifacts:
name: "$CI_JOB_NAME"
......@@ -162,7 +162,7 @@ detailed_4:
refs:
- tags
script:
- nextflow -q run workflow/main.nf -profile biohpc,cluster --fastq "test_data/hu.v2s2r10k/*.fastq.gz" --designFile "test_data/hu.v2s2r10k/design.csv" --genome 'GRCh38-1.2.0' --kitVersion 'two' --version '2.1.1'
- nextflow -q run workflow/main.nf -profile biohpc,cluster --fastq "test_data/hu.v2s2r10k/*.fastq.gz" --designFile "test_data/hu.v2s2r10k/design.csv" --genome 'GRCh38-1.2.0' --kitVersion '3GEXv2' --version '2.1.1'
- pytest -m count211
artifacts:
name: "$CI_JOB_NAME"
......
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