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Commit 63b69db8 authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
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Fix config filenames

parent 85e6ed53
2 merge requests!63Develop,!60Resolve "Add 3':5' param"
Pipeline #6535 canceled with stages
in 3 minutes and 14 seconds
params {
// Reference file paths on BioHPC
genomes {
'GRCh38-3.0.0' {
loc = '/project/apps_database/cellranger/refdata-cellranger-'
}
'GRCh38-1.2.0' {
loc = '/project/apps_database/cellranger/refdata-cellranger-'
}
'hg19-3.0.0' {
loc = '/project/apps_database/cellranger/refdata-cellranger-'
}
'hg19-1.2.0' {
loc = '/project/apps_database/cellranger/refdata-cellranger-'
}
'mm10-3.0.0' {
loc = '/project/apps_database/cellranger/refdata-cellranger-'
}
'mm10-1.2.0' {
loc = '/project/apps_database/cellranger/refdata-cellranger-'
}
'GRCh38_and_mm10-3.1.0' {
loc = '/project/apps_database/cellranger/refdata-cellranger-'
}
'hg19_and_mm10-3.0.0' {
loc = '/project/apps_database/cellranger/refdata-cellranger-'
}
'hg19_and_mm10-1.2.0' {
loc = '/project/apps_database/cellranger/refdata-cellranger-'
}
'ercc92-1.2.0' {
loc = '/project/apps_database/cellranger/refdata-cellranger-'
}
}
// Chemistry mapping parameter
chemistry {
'auto' {
param = 'auto'
}
'3GEXv1' {
param = 'SC3Pv1'
}
'3GEXv2' {
param = 'SC3Pv2'
}
'3GEXv3' {
param = 'SC3Pv3'
}
'5GEX' {
param = 'fiveprime'
}
}
}
profiles {
biohpc.local {
biohpc_local {
includeConfig 'conf/biohpc_local.config'
}
biohpc.cluster {
biohpc_cluster {
includeConfig 'conf/biohpc_cluster.config'
}
aws {
......
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