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Astrocyte
cellranger_count
Commits
63b69db8
Commit
63b69db8
authored
5 years ago
by
Gervaise Henry
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Fix config filenames
parent
85e6ed53
2 merge requests
!63
Develop
,
!60
Resolve "Add 3':5' param"
Pipeline
#6535
canceled with stages
in 3 minutes and 14 seconds
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2
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workflow/conf/biohpc.config
+0
-53
0 additions, 53 deletions
workflow/conf/biohpc.config
workflow/nextflow.config
+2
-2
2 additions, 2 deletions
workflow/nextflow.config
with
2 additions
and
55 deletions
workflow/conf/biohpc.config
deleted
100755 → 0
+
0
−
53
View file @
85e6ed53
params
{
//
Reference
file
paths
on
BioHPC
genomes
{
'GRCh38-3.0.0'
{
loc
=
'/project/apps_database/cellranger/refdata-cellranger-'
}
'GRCh38-1.2.0'
{
loc
=
'/project/apps_database/cellranger/refdata-cellranger-'
}
'hg19-3.0.0'
{
loc
=
'/project/apps_database/cellranger/refdata-cellranger-'
}
'hg19-1.2.0'
{
loc
=
'/project/apps_database/cellranger/refdata-cellranger-'
}
'mm10-3.0.0'
{
loc
=
'/project/apps_database/cellranger/refdata-cellranger-'
}
'mm10-1.2.0'
{
loc
=
'/project/apps_database/cellranger/refdata-cellranger-'
}
'GRCh38_and_mm10-3.1.0'
{
loc
=
'/project/apps_database/cellranger/refdata-cellranger-'
}
'hg19_and_mm10-3.0.0'
{
loc
=
'/project/apps_database/cellranger/refdata-cellranger-'
}
'hg19_and_mm10-1.2.0'
{
loc
=
'/project/apps_database/cellranger/refdata-cellranger-'
}
'ercc92-1.2.0'
{
loc
=
'/project/apps_database/cellranger/refdata-cellranger-'
}
}
//
Chemistry
mapping
parameter
chemistry
{
'auto'
{
param
=
'auto'
}
'3GEXv1'
{
param
=
'SC3Pv1'
}
'3GEXv2'
{
param
=
'SC3Pv2'
}
'3GEXv3'
{
param
=
'SC3Pv3'
}
'5GEX'
{
param
=
'fiveprime'
}
}
}
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workflow/nextflow.config
+
2
−
2
View file @
63b69db8
profiles
{
biohpc
.
local
{
biohpc
_
local
{
includeConfig
'conf/biohpc_local.config'
}
biohpc
.
cluster
{
biohpc
_
cluster
{
includeConfig
'conf/biohpc_cluster.config'
}
aws
{
...
...
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