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Commit 64600944 authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
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Update default params

parent da45ad47
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2 merge requests!63Develop,!60Resolve "Add 3':5' param"
Pipeline #6521 canceled with stages
...@@ -15,14 +15,14 @@ params.designFile = "${baseDir}/../test_data/design.csv" ...@@ -15,14 +15,14 @@ params.designFile = "${baseDir}/../test_data/design.csv"
params.genome = 'GRCh38-3.0.0' params.genome = 'GRCh38-3.0.0'
params.expectCells = 10000 params.expectCells = 10000
params.forceCells = 0 params.forceCells = 0
params.kitVersion = 'three' params.kitVersion = '3GEXv3'
params.version = '3.1.0' params.version = '3.1.0'
params.astrocyte = false params.astrocyte = false
params.outDir = "${baseDir}/output" params.outDir = "${baseDir}/output"
params.multiqcConf = "${baseDir}/conf/multiqc_config.yaml" params.multiqcConf = "${baseDir}/conf/multiqc_config.yaml"
params.references = "${baseDir}/../docs/references.md" params.references = "${baseDir}/../docs/references.md"
if (params.kitVersion == "three" && params.version == '2.1.1') { if (params.kitVersion == "3GEXv3" && params.version == '2.1.1') {
print("Cellranger Version 2.1.1 requires kitVersion 2") print("Cellranger Version 2.1.1 requires kitVersion 2")
System.exit(32) System.exit(32)
} }
......
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