From 646009444e230db98e1ad5d2c332bdd24adcc777 Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Mon, 13 Apr 2020 10:55:29 -0500
Subject: [PATCH] Update default params
---
workflow/main.nf | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/workflow/main.nf b/workflow/main.nf
index 07b742e..92c5569 100755
--- a/workflow/main.nf
+++ b/workflow/main.nf
@@ -15,14 +15,14 @@ params.designFile = "${baseDir}/../test_data/design.csv"
params.genome = 'GRCh38-3.0.0'
params.expectCells = 10000
params.forceCells = 0
-params.kitVersion = 'three'
+params.kitVersion = '3GEXv3'
params.version = '3.1.0'
params.astrocyte = false
params.outDir = "${baseDir}/output"
params.multiqcConf = "${baseDir}/conf/multiqc_config.yaml"
params.references = "${baseDir}/../docs/references.md"
-if (params.kitVersion == "three" && params.version == '2.1.1') {
+if (params.kitVersion == "3GEXv3" && params.version == '2.1.1') {
print("Cellranger Version 2.1.1 requires kitVersion 2")
System.exit(32)
}
--
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