diff --git a/workflow/main.nf b/workflow/main.nf index 07b742e36bbb8e09c1c26b8f2a43be1607fe98ff..92c55698720d11abfb3f1ea78fb9166dae151e52 100755 --- a/workflow/main.nf +++ b/workflow/main.nf @@ -15,14 +15,14 @@ params.designFile = "${baseDir}/../test_data/design.csv" params.genome = 'GRCh38-3.0.0' params.expectCells = 10000 params.forceCells = 0 -params.kitVersion = 'three' +params.kitVersion = '3GEXv3' params.version = '3.1.0' params.astrocyte = false params.outDir = "${baseDir}/output" params.multiqcConf = "${baseDir}/conf/multiqc_config.yaml" params.references = "${baseDir}/../docs/references.md" -if (params.kitVersion == "three" && params.version == '2.1.1') { +if (params.kitVersion == "3GEXv3" && params.version == '2.1.1') { print("Cellranger Version 2.1.1 requires kitVersion 2") System.exit(32) }