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Commit 13d1f485 authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
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Move pytest for simple ci test also

parent 948cb171
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2 merge requests!63Develop,!60Resolve "Add 3':5' param"
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.gitlab-ci.yml
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...@@ -40,8 +40,7 @@ simple_1: ...@@ -40,8 +40,7 @@ simple_1:
- develop - develop
- master - master
script: script:
- nextflow -bg run workflow/main.nf -profile biohpc,cluster --fastq "test_data/hu.v3s1r500/*.fastq.gz" --designFile "test_data/hu.v3s1r500/design.csv" --genome 'GRCh38-3.0.0' --kitVersion '3GEXv3' --version '3.1.0' -with-tower - nextflow -bg run workflow/main.nf -profile biohpc,cluster --fastq "test_data/hu.v3s1r500/*.fastq.gz" --designFile "test_data/hu.v3s1r500/design.csv" --genome 'GRCh38-3.0.0' --kitVersion '3GEXv3' --version '3.1.0' && pytest -m count310
- pytest -m count310
artifacts: artifacts:
name: "$CI_JOB_NAME" name: "$CI_JOB_NAME"
when: always when: always
...@@ -65,8 +64,7 @@ simple_2: ...@@ -65,8 +64,7 @@ simple_2:
- master - master
- tags - tags
script: script:
- nextflow -bg run workflow/main.nf -profile biohpc,cluster --fastq "test_data/mu.v3s1r500/*.fastq.gz" --designFile "test_data/mu.v3s1r500/design.csv" --genome 'mm10-3.0.0' --kitVersion '3GEXv3' --version '3.1.0' - nextflow -bg run workflow/main.nf -profile biohpc,cluster --fastq "test_data/mu.v3s1r500/*.fastq.gz" --designFile "test_data/mu.v3s1r500/design.csv" --genome 'mm10-3.0.0' --kitVersion '3GEXv3' --version '3.1.0' && pytest -m count310
- pytest -m count310
artifacts: artifacts:
name: "$CI_JOB_NAME" name: "$CI_JOB_NAME"
when: always when: always
......
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