diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index 3c4dbb76492a7bd7ebd7bff9f6f95a92948a9083..975867cc11c5812c75bd00a5fb7cb2402a36a0e2 100755 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -40,8 +40,7 @@ simple_1: - develop - master script: - - nextflow -bg run workflow/main.nf -profile biohpc,cluster --fastq "test_data/hu.v3s1r500/*.fastq.gz" --designFile "test_data/hu.v3s1r500/design.csv" --genome 'GRCh38-3.0.0' --kitVersion '3GEXv3' --version '3.1.0' -with-tower - - pytest -m count310 + - nextflow -bg run workflow/main.nf -profile biohpc,cluster --fastq "test_data/hu.v3s1r500/*.fastq.gz" --designFile "test_data/hu.v3s1r500/design.csv" --genome 'GRCh38-3.0.0' --kitVersion '3GEXv3' --version '3.1.0' && pytest -m count310 artifacts: name: "$CI_JOB_NAME" when: always @@ -65,8 +64,7 @@ simple_2: - master - tags script: - - nextflow -bg run workflow/main.nf -profile biohpc,cluster --fastq "test_data/mu.v3s1r500/*.fastq.gz" --designFile "test_data/mu.v3s1r500/design.csv" --genome 'mm10-3.0.0' --kitVersion '3GEXv3' --version '3.1.0' - - pytest -m count310 + - nextflow -bg run workflow/main.nf -profile biohpc,cluster --fastq "test_data/mu.v3s1r500/*.fastq.gz" --designFile "test_data/mu.v3s1r500/design.csv" --genome 'mm10-3.0.0' --kitVersion '3GEXv3' --version '3.1.0' && pytest -m count310 artifacts: name: "$CI_JOB_NAME" when: always