From 13d1f4854ffa509893ece4b70dc47f362b079bb8 Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Mon, 13 Apr 2020 19:54:28 -0500
Subject: [PATCH] Move pytest for simple ci test also
---
.gitlab-ci.yml | 6 ++----
1 file changed, 2 insertions(+), 4 deletions(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 3c4dbb7..975867c 100755
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -40,8 +40,7 @@ simple_1:
- develop
- master
script:
- - nextflow -bg run workflow/main.nf -profile biohpc,cluster --fastq "test_data/hu.v3s1r500/*.fastq.gz" --designFile "test_data/hu.v3s1r500/design.csv" --genome 'GRCh38-3.0.0' --kitVersion '3GEXv3' --version '3.1.0' -with-tower
- - pytest -m count310
+ - nextflow -bg run workflow/main.nf -profile biohpc,cluster --fastq "test_data/hu.v3s1r500/*.fastq.gz" --designFile "test_data/hu.v3s1r500/design.csv" --genome 'GRCh38-3.0.0' --kitVersion '3GEXv3' --version '3.1.0' && pytest -m count310
artifacts:
name: "$CI_JOB_NAME"
when: always
@@ -65,8 +64,7 @@ simple_2:
- master
- tags
script:
- - nextflow -bg run workflow/main.nf -profile biohpc,cluster --fastq "test_data/mu.v3s1r500/*.fastq.gz" --designFile "test_data/mu.v3s1r500/design.csv" --genome 'mm10-3.0.0' --kitVersion '3GEXv3' --version '3.1.0'
- - pytest -m count310
+ - nextflow -bg run workflow/main.nf -profile biohpc,cluster --fastq "test_data/mu.v3s1r500/*.fastq.gz" --designFile "test_data/mu.v3s1r500/design.csv" --genome 'mm10-3.0.0' --kitVersion '3GEXv3' --version '3.1.0' && pytest -m count310
artifacts:
name: "$CI_JOB_NAME"
when: always
--
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