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Commit 08efee32 authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
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Update README.md

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2 merge requests!53Develop,!37Resolve "Make changelog"
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...@@ -31,6 +31,7 @@ To Run: ...@@ -31,6 +31,7 @@ To Run:
* column 2 = "fastq_R1" * column 2 = "fastq_R1"
* column 3 = "fastq_R2" * column 3 = "fastq_R2"
* can have repeated "Sample" if there are multiple fastq R1/R2 pairs for the samples * can have repeated "Sample" if there are multiple fastq R1/R2 pairs for the samples
* can be downloaded [HERE](https://git.biohpc.swmed.edu/BICF/Astrocyte/cellranger_count/blob/master/docs/design.csv)
* eg: **--designFile '/project/shared/bicf_workflow_ref/workflow_testdata/cellranger/cellranger_count/v3s2r100k/design.csv'** * eg: **--designFile '/project/shared/bicf_workflow_ref/workflow_testdata/cellranger/cellranger_count/v3s2r100k/design.csv'**
* **--genome** * **--genome**
* reference genome * reference genome
...@@ -97,3 +98,5 @@ To Run: ...@@ -97,3 +98,5 @@ To Run:
| sample1 | pbmc_1k_v2_S1_L001_R1_001.fastq.gz | pbmc_1k_v2_S1_L001_R2_001.fastq.gz | | sample1 | pbmc_1k_v2_S1_L001_R1_001.fastq.gz | pbmc_1k_v2_S1_L001_R2_001.fastq.gz |
| sample2 | pbmc_1k_v2_S2_L001_R1_001.fastq.gz | pbmc_1k_v2_S2_L001_R2_001.fastq.gz | | sample2 | pbmc_1k_v2_S2_L001_R1_001.fastq.gz | pbmc_1k_v2_S2_L001_R2_001.fastq.gz |
| sample2 | pbmc_1k_v2_S2_L002_R1_001.fastq.gz | pbmc_1k_v2_S2_L002_R2_001.fastq.gz | | sample2 | pbmc_1k_v2_S2_L002_R1_001.fastq.gz | pbmc_1k_v2_S2_L002_R2_001.fastq.gz |
[**CHANGELOG**](https://git.biohpc.swmed.edu/BICF/Astrocyte/cellranger_count/blob/develop/CHANGELOG.md)
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