diff --git a/README.md b/README.md index e67ff5c6fa2ec2ad582d8b3b9f6bed26cbdef45e..cff40b525bfdbbcd2e25f7769fcdf8c7615912cd 100755 --- a/README.md +++ b/README.md @@ -31,6 +31,7 @@ To Run: * column 2 = "fastq_R1" * column 3 = "fastq_R2" * can have repeated "Sample" if there are multiple fastq R1/R2 pairs for the samples + * can be downloaded [HERE](https://git.biohpc.swmed.edu/BICF/Astrocyte/cellranger_count/blob/master/docs/design.csv) * eg: **--designFile '/project/shared/bicf_workflow_ref/workflow_testdata/cellranger/cellranger_count/v3s2r100k/design.csv'** * **--genome** * reference genome @@ -97,3 +98,5 @@ To Run: | sample1 | pbmc_1k_v2_S1_L001_R1_001.fastq.gz | pbmc_1k_v2_S1_L001_R2_001.fastq.gz | | sample2 | pbmc_1k_v2_S2_L001_R1_001.fastq.gz | pbmc_1k_v2_S2_L001_R2_001.fastq.gz | | sample2 | pbmc_1k_v2_S2_L002_R1_001.fastq.gz | pbmc_1k_v2_S2_L002_R2_001.fastq.gz | + +[**CHANGELOG**](https://git.biohpc.swmed.edu/BICF/Astrocyte/cellranger_count/blob/develop/CHANGELOG.md)