From 08efee32759fc1ee75eb5316c3d0a684094a23ac Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Sat, 27 Apr 2019 14:16:16 -0500
Subject: [PATCH] Update README.md
---
README.md | 3 +++
1 file changed, 3 insertions(+)
diff --git a/README.md b/README.md
index e67ff5c..cff40b5 100755
--- a/README.md
+++ b/README.md
@@ -31,6 +31,7 @@ To Run:
* column 2 = "fastq_R1"
* column 3 = "fastq_R2"
* can have repeated "Sample" if there are multiple fastq R1/R2 pairs for the samples
+ * can be downloaded [HERE](https://git.biohpc.swmed.edu/BICF/Astrocyte/cellranger_count/blob/master/docs/design.csv)
* eg: **--designFile '/project/shared/bicf_workflow_ref/workflow_testdata/cellranger/cellranger_count/v3s2r100k/design.csv'**
* **--genome**
* reference genome
@@ -97,3 +98,5 @@ To Run:
| sample1 | pbmc_1k_v2_S1_L001_R1_001.fastq.gz | pbmc_1k_v2_S1_L001_R2_001.fastq.gz |
| sample2 | pbmc_1k_v2_S2_L001_R1_001.fastq.gz | pbmc_1k_v2_S2_L001_R2_001.fastq.gz |
| sample2 | pbmc_1k_v2_S2_L002_R1_001.fastq.gz | pbmc_1k_v2_S2_L002_R2_001.fastq.gz |
+
+[**CHANGELOG**](https://git.biohpc.swmed.edu/BICF/Astrocyte/cellranger_count/blob/develop/CHANGELOG.md)
--
GitLab