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Commit 4d08d4ea authored by Venkat Malladi's avatar Venkat Malladi
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remove cutoff ration.

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workflow/main.nf
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...@@ -13,7 +13,6 @@ params.bwaIndex = params.genome ? params.genomes[ params.genome ].bwa ?: false : ...@@ -13,7 +13,6 @@ params.bwaIndex = params.genome ? params.genomes[ params.genome ].bwa ?: false :
params.genomeSize = params.genome ? params.genomes[ params.genome ].genomesize ?: false : false params.genomeSize = params.genome ? params.genomes[ params.genome ].genomesize ?: false : false
params.chromSizes = params.genome ? params.genomes[ params.genome ].chromsizes ?: false : false params.chromSizes = params.genome ? params.genomes[ params.genome ].chromsizes ?: false : false
params.tssFile = params.genome ? params.genomes[ params.genome ].tssfile ?: false : false params.tssFile = params.genome ? params.genomes[ params.genome ].tssfile ?: false : false
params.cutoffRatio = 1.2
// Check inputs // Check inputs
if( params.bwaIndex ){ if( params.bwaIndex ){
...@@ -36,7 +35,6 @@ pairedEnd = params.pairedEnd ...@@ -36,7 +35,6 @@ pairedEnd = params.pairedEnd
designFile = params.designFile designFile = params.designFile
genomeSize = params.genomeSize genomeSize = params.genomeSize
chromSizes = params.chromSizes chromSizes = params.chromSizes
cutoffRatio = params.cutoffRatio
tssFile = params.tssFile tssFile = params.tssFile
process checkDesignFile { process checkDesignFile {
......
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