From 4d08d4ea13808b829ea634e509062ad25fdf2bb9 Mon Sep 17 00:00:00 2001
From: Venkat Malladi <venkat.malladi@utsouthwestern.edu>
Date: Tue, 19 Jun 2018 14:30:54 -0500
Subject: [PATCH] remove cutoff ration.
---
workflow/main.nf | 2 --
1 file changed, 2 deletions(-)
diff --git a/workflow/main.nf b/workflow/main.nf
index 2736346..450f470 100644
--- a/workflow/main.nf
+++ b/workflow/main.nf
@@ -13,7 +13,6 @@ params.bwaIndex = params.genome ? params.genomes[ params.genome ].bwa ?: false :
params.genomeSize = params.genome ? params.genomes[ params.genome ].genomesize ?: false : false
params.chromSizes = params.genome ? params.genomes[ params.genome ].chromsizes ?: false : false
params.tssFile = params.genome ? params.genomes[ params.genome ].tssfile ?: false : false
-params.cutoffRatio = 1.2
// Check inputs
if( params.bwaIndex ){
@@ -36,7 +35,6 @@ pairedEnd = params.pairedEnd
designFile = params.designFile
genomeSize = params.genomeSize
chromSizes = params.chromSizes
-cutoffRatio = params.cutoffRatio
tssFile = params.tssFile
process checkDesignFile {
--
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