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Commit 3178fa73 authored by Venkat Malladi's avatar Venkat Malladi
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Fix bwa Index name.

parent f0c48d34
1 merge request!28Resolve "Astrocyte fixes"
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...@@ -53,9 +53,9 @@ if (params.astrocyte) { ...@@ -53,9 +53,9 @@ if (params.astrocyte) {
} }
// Check inputs // Check inputs
if(params.bwa) { if(params.bwaIndex) {
bwa= Channel bwaIndex = Channel
.fromPath(params.bwa) .fromPath(params.bwaIndex)
.ifEmpty { exit 1, "BWA index not found: ${params.bwaIndex}" } .ifEmpty { exit 1, "BWA index not found: ${params.bwaIndex}" }
} else { } else {
exit 1, "No reference genome specified." exit 1, "No reference genome specified."
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