Commit f0c48d34 authored by Venkat Malladi's avatar Venkat Malladi

Fix typos

parent 9dd357a9
Pipeline #7296 failed with stages
in 21 seconds
......@@ -52,29 +52,10 @@ if (params.astrocyte) {
params.geneNames = params.genome ? params.genomes[ params.genome ].geneNames ?: false : false
}
genomes {
'GRCh38' {
blacklistfile = '/project/shared/bicf_workflow_ref/GRCh38/ENCFF356LFX.bed'
geneNames = '/project/shared/bicf_workflow_ref/human/GRCh38/genenames.txt'
}
'GRCm38' {
bwa = '/project/shared/bicf_workflow_ref/GRCm38'
genomesize = 'mm'
chromsizes = '/project/shared/bicf_workflow_ref/GRCm38/genomefile.txt'
gtffile = '/project/shared/bicf_workflow_ref/GRCm38/gencode.vM20.annotation.gtf'
blacklistfile = '/project/shared/bicf_workflow_ref/GRCm38/ENCFF999QPV.bed'
geneNames = '/project/shared/bicf_workflow_ref/mouse/GRCm38/genenames.txt'
}
}
// Check inputs
if(params.bwa) {
bwa= Channel
.fromPath(params.bwa\)
.fromPath(params.bwa)
.ifEmpty { exit 1, "BWA index not found: ${params.bwaIndex}" }
} else {
exit 1, "No reference genome specified."
......
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