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Commit 38234440 authored by Venkat Malladi's avatar Venkat Malladi
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Add in potential histone processing.

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# Processing Histone centric data
bedops --everything H3K4me1_filtered_peaks.bed H3K27ac_filtered_peaks.bed | bedops -m --range -1 - > Histone_putative_enhancers.bed
# RPKM Filtering
# Get RPKM
./rpkm.py --peaks Histone_putative_enhancers.bed --experiments h3k4me1_list.csv -f H3K4me1_hc
./rpkm.py --peaks Histone_putative_enhancers.bed --experiments h3k27ac_list.csv -f H3K27ac_hc
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