diff --git a/histone_centered_processing.sh b/histone_centered_processing.sh new file mode 100644 index 0000000000000000000000000000000000000000..262a63d943ea95a9d0baba54c1ce44a09e3ca8d7 --- /dev/null +++ b/histone_centered_processing.sh @@ -0,0 +1,8 @@ +# Processing Histone centric data + +bedops --everything H3K4me1_filtered_peaks.bed H3K27ac_filtered_peaks.bed | bedops -m --range -1 - > Histone_putative_enhancers.bed + +# RPKM Filtering +# Get RPKM +./rpkm.py --peaks Histone_putative_enhancers.bed --experiments h3k4me1_list.csv -f H3K4me1_hc +./rpkm.py --peaks Histone_putative_enhancers.bed --experiments h3k27ac_list.csv -f H3K27ac_hc