update README.md

.idea/misc.xml

 <?xml version="1.0" encoding="UTF-8"?>
 <project version="4">
+  <component name="Black">
+    <option name="sdkName" value="$USER_HOME$/anaconda3" />
+  </component>
   <component name="ProjectRootManager" version="2" project-jdk-name="$USER_HOME$/anaconda3" project-jdk-type="Python SDK" />
 </project>
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README.md

-# Context Awared Template maCHING (CATCHing) for subtomogram averaging
+# Context Awared Template Matching (CATM) for Cryo-ET subtomogram averaging
 
-# Caching version 0.1
-[![DOI](https://zenodo.org/badge/222662248.svg)](https://zenodo.org/badge/latestdoi/222662248)
+# CATM version 0.1
+[![DOI](https://zenodo.org/badge/13315543.svg)](https://zenodo.org/badge/latestdoi/)
 ##
 # Introduction
 This software is designed for the using
@@ -12,7 +12,12 @@ python version at least 3.5 is required. If you download the package as a zip fi
 1.  Creat a new vitual enviroment (optional)
 
 ```
-conda create -n catching python 
+conda create -n CATM python 
+```
+2. Download the package from gitlab and change directory to the CATM folder
+```
+git clone https://git.biohpc.swmed.edu/s194231/cryo-catm.git
+cd cryo-catm
 ```
 
 2.  Install the package
@@ -22,8 +27,12 @@ pip install .
 ```
 
 3. Test the installation
+
 ```
-catching_test
+cd test
+
+CATM
+
 ```