diff --git a/.idea/misc.xml b/.idea/misc.xml index 582a97a59c5400c2521d2a6287639970dfa2581a..309fdffc67598506a51ecd56da00ed7dc920d9f4 100644 --- a/.idea/misc.xml +++ b/.idea/misc.xml @@ -1,4 +1,7 @@ <?xml version="1.0" encoding="UTF-8"?> <project version="4"> + <component name="Black"> + <option name="sdkName" value="$USER_HOME$/anaconda3" /> + </component> <component name="ProjectRootManager" version="2" project-jdk-name="$USER_HOME$/anaconda3" project-jdk-type="Python SDK" /> </project> \ No newline at end of file diff --git a/README.md b/README.md index 446e90a0c3acf59a99ed9393d9f683b833998d48..2bcb5cccd3591ce1f1d5f423817eec5d3c38a200 100644 --- a/README.md +++ b/README.md @@ -1,7 +1,7 @@ -# Context Awared Template maCHING (CATCHing) for subtomogram averaging +# Context Awared Template Matching (CATM) for Cryo-ET subtomogram averaging -# Caching version 0.1 -[](https://zenodo.org/badge/latestdoi/222662248) +# CATM version 0.1 +[](https://zenodo.org/badge/latestdoi/) ## # Introduction This software is designed for the using @@ -12,7 +12,12 @@ python version at least 3.5 is required. If you download the package as a zip fi 1. Creat a new vitual enviroment (optional) ``` -conda create -n catching python +conda create -n CATM python +``` +2. Download the package from gitlab and change directory to the CATM folder +``` +git clone https://git.biohpc.swmed.edu/s194231/cryo-catm.git +cd cryo-catm ``` 2. Install the package @@ -22,8 +27,12 @@ pip install . ``` 3. Test the installation + ``` -catching_test +cd test + +CATM + ```