Commits · 027086071c98bb60bc5c1b0d585a40b19c90e546 · NGS CLIA Lab / process_scripts

May 07, 2019
- Merge branch 'master' of git.biohpc.swmed.edu:BICF/Astrocyte/process_scripts into idt_devel · 02708607
  Brandi Cantarel authored 5 years ago
  
  02708607
- update union and snsp with mnv->snv · 1588fae4
  Brandi Cantarel authored 5 years ago
  
  1588fae4
May 06, 2019
- update markdups · d6c6fbbf
  Brandi Cantarel authored 5 years ago
  
  d6c6fbbf
May 04, 2019
- adding dependencies · 4b2bd485
  Brandi Cantarel authored 5 years ago
  
  4b2bd485
May 01, 2019
- merging master branch changes · ca4a97e2
  Brandi Cantarel authored 5 years ago
  
  ca4a97e2
- updating workflow · 4f642d9c
  Brandi Cantarel authored 5 years ago
  
  4f642d9c
Apr 26, 2019
- Merge branch '1-deafix-heatmap' into 'master' · 56d8030e
  Venkat Malladi authored 5 years ago
```
fix for 1-deafix-heatmap

Closes #1

See merge request BICF/Astrocyte/process_scripts!5
```
  56d8030e
Apr 19, 2019
- fix for 1-deafix-heatmap · 93d52e97
  Holly Ruess authored 5 years ago
  
  93d52e97
Apr 16, 2019
- adding rmdup bamqc · 9f6d0f8f
  Brandi Cantarel authored 5 years ago
  
  9f6d0f8f
Apr 11, 2019
- updates for version3 · c6d8d42c
  Brandi Cantarel authored 5 years ago
  
  c6d8d42c
Apr 04, 2019
- update filter pindel.pl · f98571cb
  Brandi Cantarel authored 6 years ago
  
  f98571cb
Mar 29, 2019
- Merge branch 'master' of git.biohpc.swmed.edu:BICF/Astrocyte/process_scripts into idt_devel · f14a813e
  Brandi Cantarel authored 6 years ago
  
  f14a813e
- adding gatk4 · 2036e8e1
  Brandi Cantarel authored 6 years ago
  
  2036e8e1
- Merge branch 'master' of git.biohpc.swmed.edu:BICF/Astrocyte/process_scripts · f1aeb7cf
  Brandi Cantarel authored 6 years ago
  
  f1aeb7cf
- adding OncoKB, markdups · a7cafc91
  Brandi Cantarel authored 6 years ago
  
  a7cafc91
Mar 21, 2019
- Merge branch 'master' of git.biohpc.swmed.edu:BICF/Astrocyte/process_scripts · 5af4263b
  Brandi Cantarel authored 6 years ago
  
  5af4263b
- bugfix sv errors · 5185770b
  Brandi Cantarel authored 6 years ago
  
  5185770b
Mar 18, 2019
- adding oncokb hotspot · 92e3a426
  Brandi Cantarel authored 6 years ago
  
  92e3a426
Mar 12, 2019
- remove temp fgbio · 6a875eb3
  Brandi Cantarel authored 6 years ago
  
  6a875eb3
Mar 11, 2019
- add umihist to alignment · ddbcd917
  Brandi Cantarel authored 6 years ago
  
  ddbcd917
Mar 02, 2019
- Merge branch 'master' of git.biohpc.swmed.edu:BICF/Astrocyte/process_scripts · a425c958
  Brandi Cantarel authored 6 years ago
  
  a425c958
- new gnomad version · 44e1d679
  Brandi Cantarel authored 6 years ago
  
  44e1d679
Feb 28, 2019
- Merge branch 'master' of git.biohpc.swmed.edu:BICF/Astrocyte/process_scripts · 6736c698
  Brandi Cantarel authored 6 years ago
  
  6736c698
- Merge branch 'master' of git.biohpc.swmed.edu:BICF/Astrocyte/process_scripts · 705d8a6e
  Brandi Cantarel authored 6 years ago
  
  705d8a6e
- revert old gnomad · 4f3668c2
  Brandi Cantarel authored 6 years ago
  
  4f3668c2
- hisat genotype reference location bug · a08836cd
  Brandi Cantarel authored 6 years ago
  
  a08836cd
- updates for bugs · ee75859c
  Brandi Cantarel authored 6 years ago
  
  ee75859c
Feb 27, 2019
- Merge branch 'master' of git.biohpc.swmed.edu:BICF/Astrocyte/process_scripts · 0eb7ce32
  Brandi Cantarel authored 6 years ago
  
  0eb7ce32
- add EV's version · 231cb788
  Brandi Cantarel authored 6 years ago
  
  231cb788
- update GRCh38-> human/GRCh38 · 2d455586
  Brandi Cantarel authored 6 years ago
  
  2d455586
- update reference location · 4222e4aa
  Brandi Cantarel authored 6 years ago
  
  4222e4aa
- adding HG19_VARIANT to gnomad · 8debcbfa
  Brandi Cantarel authored 6 years ago
  
  8debcbfa
Feb 20, 2019
- Merge branch 'master' of git.biohpc.swmed.edu:BICF/Astrocyte/process_scripts · ef6a9e23
  Brandi Cantarel authored 6 years ago
  
  ef6a9e23
- update to if for reference location · dfe396d9
  Brandi Cantarel authored 6 years ago
  
  dfe396d9
- update reference location · 59c20a67
  Brandi Cantarel authored 6 years ago
  
  59c20a67
Feb 11, 2019
- update agfusion · bceadcbc
  Brandi Cantarel authored 6 years ago
  
  bceadcbc
Feb 10, 2019
- file name locations · 1e078e99
  Brandi Cantarel authored 6 years ago
  
  1e078e99
Feb 05, 2019
- Merge branch 'master' of git.biohpc.swmed.edu:BICF/Astrocyte/process_scripts · c45885f9
  Brandi Cantarel authored 6 years ago
  
  c45885f9
- remove tempdir option · f28e6b48
  Brandi Cantarel authored 6 years ago
  
  f28e6b48
Feb 02, 2019
- update · cba11424
  Brandi Cantarel authored 6 years ago
  
  publish_0.1.4
  
  cba11424