Merge branch 'master' of git.biohpc.swmed.edu:ngsclialab/process_scripts (b3782a7c) · Commits · NGS CLIA Lab / process_scripts · GitLab

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NGS CLIA Lab
process_scripts
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b3782a7c

Commit b3782a7c authored 4 years ago by

Brandi Cantarel

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Merge branch 'master' of git.biohpc.swmed.edu:ngsclialab/process_scripts

parents 85a26a5e 34b23838

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alignment/bamqc.sh 6 additions, 2 deletions

alignment/bamqc.sh
alignment/sequenceqc_dna.pl 139 additions, 0 deletions

alignment/sequenceqc_dna.pl
alignment/sequenceqc_rna.pl 78 additions, 0 deletions

alignment/sequenceqc_rna.pl
cvc/add_umi_sam.py 1 addition, 0 deletions

cvc/add_umi_sam.py
cvc/dna_trim_align.sh 16 additions, 6 deletions

cvc/dna_trim_align.sh
cvc/parse_trimreport.pl 1 addition, 0 deletions

cvc/parse_trimreport.pl
genect_rnaseq/fpkm_subset_panel.pl 85 additions, 0 deletions

genect_rnaseq/fpkm_subset_panel.pl
genect_rnaseq/geneabundance.sh 10 additions, 2 deletions

genect_rnaseq/geneabundance.sh
genect_rnaseq/statanal.sh 2 additions, 1 deletion

genect_rnaseq/statanal.sh
preproc_fastq/trimgalore.sh 13 additions, 5 deletions

preproc_fastq/trimgalore.sh
variants/filter_cnvkit.pl 2 additions, 2 deletions

variants/filter_cnvkit.pl
variants/germline_vc.sh 7 additions, 1 deletion

variants/germline_vc.sh
variants/somatic_vc.sh 10 additions, 4 deletions

variants/somatic_vc.sh
variants/svcalling.sh 11 additions, 22 deletions

variants/svcalling.sh

with 381 additions and 45 deletions

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