adding if is docker (ac7a88b4) · Commits · NGS CLIA Lab / process_scripts · GitLab

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NGS CLIA Lab
process_scripts
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ac7a88b4

Commit ac7a88b4 authored 4 years ago by

Brandi Cantarel

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adding if is docker

parent e5a54f52

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Changes 13

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alignment/bamqc.sh 6 additions, 2 deletions

alignment/bamqc.sh
alignment/dnaseqalign.sh 6 additions, 3 deletions

alignment/dnaseqalign.sh
alignment/markdups.sh 18 additions, 11 deletions

alignment/markdups.sh
alignment/starfusion.sh 5 additions, 2 deletions

alignment/starfusion.sh
alignment/virusalign.sh 5 additions, 2 deletions

alignment/virusalign.sh
genect_rnaseq/geneabundance.sh 5 additions, 2 deletions

genect_rnaseq/geneabundance.sh
preproc_fastq/trimgalore.sh 6 additions, 3 deletions

preproc_fastq/trimgalore.sh
variants/checkmate.sh 11 additions, 15 deletions

variants/checkmate.sh
variants/cnvkit.sh 5 additions, 4 deletions

variants/cnvkit.sh
variants/gatkrunner.sh 5 additions, 2 deletions

variants/gatkrunner.sh
variants/msisensor.sh 0 additions, 1 deletion

variants/msisensor.sh
variants/uni_norm_annot.sh 5 additions, 4 deletions

variants/uni_norm_annot.sh
variants/union.sh 6 additions, 4 deletions

variants/union.sh

with 83 additions and 55 deletions

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