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Commit 93333bf7 authored by Brandi Cantarel's avatar Brandi Cantarel
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location change clinseqfiles

parent e066daaa
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...@@ -15,13 +15,13 @@ while (my $line = <ENT>) { ...@@ -15,13 +15,13 @@ while (my $line = <ENT>) {
$entrez{$row[2]} = $row[1]; $entrez{$row[2]} = $row[1];
} }
} }
open OM, "</project/shared/bicf_workflow_ref/GRCh38/utswv2_known_genefusions.txt" or die $!; open OM, "</project/shared/bicf_workflow_ref/GRCh38/clinseq_prj/utswv2_known_genefusions.txt" or die $!;
while (my $line = <OM>) { while (my $line = <OM>) {
chomp($line); chomp($line);
$known{$line} = 1; $known{$line} = 1;
} }
close OM; close OM;
open OM, "</project/shared/bicf_workflow_ref/GRCh38/panel1385.genelist.txt" or die $!; open OM, "</project/shared/bicf_workflow_ref/GRCh38/clinseq_prj/panel1385.genelist.txt" or die $!;
while (my $line = <OM>) { while (my $line = <OM>) {
chomp($line); chomp($line);
$keep{$line} = 1; $keep{$line} = 1;
......
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