From 93333bf7373deb2e69e02a9f469014760a770852 Mon Sep 17 00:00:00 2001
From: Brandi Cantarel <brandi.cantarel@utsouthwestern.edu>
Date: Tue, 6 Mar 2018 11:38:16 -0600
Subject: [PATCH] location change clinseqfiles
---
alignment/filter_genefusions.pl | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/alignment/filter_genefusions.pl b/alignment/filter_genefusions.pl
index 468660c..cc6481c 100755
--- a/alignment/filter_genefusions.pl
+++ b/alignment/filter_genefusions.pl
@@ -15,13 +15,13 @@ while (my $line = <ENT>) {
$entrez{$row[2]} = $row[1];
}
}
-open OM, "</project/shared/bicf_workflow_ref/GRCh38/utswv2_known_genefusions.txt" or die $!;
+open OM, "</project/shared/bicf_workflow_ref/GRCh38/clinseq_prj/utswv2_known_genefusions.txt" or die $!;
while (my $line = <OM>) {
chomp($line);
$known{$line} = 1;
}
close OM;
-open OM, "</project/shared/bicf_workflow_ref/GRCh38/panel1385.genelist.txt" or die $!;
+open OM, "</project/shared/bicf_workflow_ref/GRCh38/clinseq_prj/panel1385.genelist.txt" or die $!;
while (my $line = <OM>) {
chomp($line);
$keep{$line} = 1;
--
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