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Commit 6d29a48f authored by Brandi Cantarel's avatar Brandi Cantarel
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add baseDir to trimGalore

parent 6c0e8739
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preproc_fastq/trimgalore.sh
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......@@ -22,6 +22,7 @@ do
done
shift $(($OPTIND -1))
baseDir="`dirname \"$0\"`"
# Check for mandatory options
if [[ -z $pair_id ]] || [[ -z $fq1 ]]; then
......
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