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Commit 3b2add36 authored by Brandi Cantarel's avatar Brandi Cantarel
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perl script error

parent b92e058d
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#!/bin/bin/perl #!/bin/bin/perl
use strict;
use warnings;
use diagnostics; use diagnostics;
use Getopt::Long; use Getopt::Long;
my ($genelist,$fpkm_file) = ("") x 2; my ($genelist,$fpkm_file,$geneinfo) = ("") x 3;
GetOptions( 'g|genes=s' => \$genelist, GetOptions( 'g|genes=s' => \$genelist,
'f|fpkm=s' => \$fpkm_file, 'f|fpkm=s' => \$fpkm_file,
'i|geneinfo=s'=> \$refinfo); 'i|geneinfo=s'=> \$geneinfo);
my $fpkm_out = $fpkm_file; my $fpkm_out = $fpkm_file;
$fpkm_out =~ s/\.fpkm.+txt/\.fpkm.capture.txt/; $fpkm_out =~ s/\.fpkm.+txt/\.fpkm.capture.txt/;
......
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