diff --git a/genect_rnaseq/fpkm_subset_panel.pl b/genect_rnaseq/fpkm_subset_panel.pl index 4c37da57d943a8f4d9740700b24e011fc1af6b9b..b7c2d41a80e5d4959ad9f09346c6724385ee2aec 100755 --- a/genect_rnaseq/fpkm_subset_panel.pl +++ b/genect_rnaseq/fpkm_subset_panel.pl @@ -1,15 +1,13 @@ #!/bin/bin/perl -use strict; -use warnings; use diagnostics; use Getopt::Long; -my ($genelist,$fpkm_file) = ("") x 2; +my ($genelist,$fpkm_file,$geneinfo) = ("") x 3; GetOptions( 'g|genes=s' => \$genelist, 'f|fpkm=s' => \$fpkm_file, - 'i|geneinfo=s'=> \$refinfo); + 'i|geneinfo=s'=> \$geneinfo); my $fpkm_out = $fpkm_file; $fpkm_out =~ s/\.fpkm.+txt/\.fpkm.capture.txt/;