Fix output

workflow/scrna-seq_imgen.nf

@@ -18,7 +18,7 @@ params.studyIID = "studyIID"
 params.applicationName = "applicationName"
 
 params.outDir = "${baseDir}/../output"
-params.outDirS3 = "s3://gudmap.rbk"
+params.outDirS3 = "s3://gudmap.rbk/output"
 
 // Parse input variables
 rda = Channel.fromPath(params.rda)
@@ -58,10 +58,10 @@ if (params.s3) {
     outDir = "${params.outDirS3}/images"
   }
 } else {
-    if (params.consortium) {
+  if (params.consortium) {
     outDir = "${params.outDir}/deriva/Seq/${params.studyIID}/application_files/${params.applicationName}"
   } else {
-    outDir = "${params.outDir}/images}"
+    outDir = "${params.outDir}/images"
   }
 }
 logsDir = "${params.outDir}/logs"