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Created with Raphaël 2.2.025Aug2420191615141312111087654331Jul3023151420May13116542130Apr27252422732130Mar2726242321201918161514131298628Feb18171514121110743230Jan29282724232221201918171514136311Dec9325Nov2015141186431Oct30292823161511812SepUpdate multiqc run table for reporting convenience #72Add fastq override #71Add CI test for inputBag overrideAllow override for input bagit #61Update docs/dag.pngUpdate create test data script for count #73Update unit test for count #73Update unit test for count #73Update unit test for count #73Update unit test for count #73Add new custom tables to multiqc #72Update tpm table #73Merge branch 'develop' into 'master'0.0.20.0.2Merge branch 'remove.tpm.col' into 'develop'Update docs/dag.pngUpdate CHANGELOG.mdReall remove unnecessary cols from tpm tableFix Entrez nameRemove unnecessary columns on tpm tableMerge branch 'develop' into 'master'Merge branch '62-output.inputBagit' into 'develop'Update dagUpdate changelogOutput tpm tableRemove resume from study run (only 1 resume per folder allowed)Add resume to by studyRevert study split to 5 parallel runsRevert study split to 5 parallel runs 15sec breakTurn off run logsRemove parallelization of trim_galoreRun getData on superFix getRefs to use superFix splitStudy for slurmRun all getRefs on super (runniung by study overutilizes local)Allow study script to run on clusterIncrease delay between study initiated runs to 30sChange unit test for trim to match new settingMake by study script run nextflow with quiet flagRemove Illumina addapter trim restriction, set to default (auto) and limit cores to 4Put 10sec delay between study launch + 25 parallel